species:   Rhsol
pid:       PID0487
parent:    Rhi-milR-90
paralog:   
locus:     KB317817.1:12330-12409
matures:   ['GUCGUUUGCCAGAGUGGUUAAUGG', 'AUAUAAUGGUGGUGAUUGACAG']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317817.1:12330-12409

0 out of bounds
47 alignments
47 proper strand
42 stranded perfect matches

          ***************************      *****************************        
AGUAGAGAGGAUGUAUAUAAUGGUGGUGAUUGACAGCUACGCCGUGGUCGUUUGCCAGAGUGGUUAAUGGGUGCCCCUGC
.((((.(.((((.(((.((((..((((((.((((.((......)).)))).)))))).....))))))).)).)))))))
----------------------------------------------GUCGUUUGCCAGAGUGGUUAAUGG---------- l=24 a=2 c
--------------AUAUAAUGGUGGUGAUUGACAG-------------------------------------------- l=22 a=0 c*
---------------------------------------------GGUCGUUUGCCAGAGUGGUUAAUGGGU-------- l=27 a=24 ma
------------GUAUAUAAUGGUGGUGAUUGACAGC------------------------------------------- l=25 a=0 ma*

-------------------------------------------------GUUUGCCAGAGUGGUUAAUGG---------- l=21 a=1 
----------------------------------------------GUCGUUUGCCAGAGUGG----------------- l=17 a=1 
----------------------------------------------GUCGUUUGCCAGAGUGGU---------------- l=18 a=1 
----------------------------------------------GUCGUUUGCCAGAGUGGUUAAUGG---------- l=24 a=2 (c)
----------------------------------------------GUCGUUUGCCAGAGUGGUUAAUGGuUGC------ l=28 a=1 
---------------------------------------------GGUCGUUUGCCAGAGUGG----------------- l=18 a=1 
---------------------------------------------GGUCGUUUGCCAGAGUGGU---------------- l=19 a=1 
---------------------------------------------GGUCGUUUGCCAGAGUGGUUAAUGG---------- l=25 a=9 
---------------------------------------------GGUCGUUUGCCAGAGUGGUUAAUGGGU-------- l=27 a=24 (ma)
---------------------------------------------GGUCGUUUGCCAGAGUGGUUAAUGGuU-------- l=27 a=2 
---------------------------------------------GGUCGUUUGCCAGAGUGGUUAAUGGaU-------- l=27 a=1 
---------------------------------------------GGUCGUUUGCaAGAGUGGUUAAUGGGU-------- l=27 a=1 
-------------------------------------------GUGGUCGUUUGCCAGAGUGG----------------- l=20 a=1 
-------------------------------------------GUGGUCGUUUGCCAGAGUGGU---------------- l=21 a=1 

mb-01011
ax-1001001
ku-01
ss-101011101110
fn-111
